BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002H11SP1|AL425043
(681 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1077 1260 0.0
>3x_Contig1077
Length = 5094
Score = 1260 bits (622), Expect = 0.0
Identities = 658/682 (96%), Gaps = 2/682 (0%)
Strand = Plus / Minus
Query: 1 accaatcctkgaagatgaggatagacgtataggtattgttacaggggtccaagcatacaa 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2663 accaatcctggaagatgaggatagacgtataggtattgttacaggggtccaagcatacaa 2604
Query: 61 ttkgtccaaaatcaccgtttckkgtgttggtkcacatkcaggtacgactcctctggagat 120
|| |||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct: 2603 ttggtccaaaatcaccgtttcgggtgttggtgcacatgcaggtacgactcct-tggagat 2545
Query: 121 tgagaaaggatgctcttttkatgacctcgaagatgatctgtgctgctgcggaaattgctg 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2544 tgagaaaggatgctcttttgatgacctcgaagatgatctgtgctgctgcggaaattgctg 2485
Query: 181 aaa-ccacgatkgtttgtttaccaccggtgttatagacgttaaaccatactctgttaata 239
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2484 aaagccacgatggtttgtttaccaccggtgttatagacgttaaaccatactctgttaata 2425
Query: 240 tcattccaggtgaagttaccttcacgatggatctaagacactactctkatgaaatgttaa 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2424 tcattccaggtgaagttaccttcacgatggatctaagacactactctgatgaaatgttaa 2365
Query: 300 agcagatcattkaggagattcaatctgcttttgataagttgattaagaacaataagggcg 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 agcagatcattgaggagattcaatctgcttttgataagttgattaagaacaataagggcg 2305
Query: 360 gtgcgttgacatatgamagggaggtcctacaggtctcgccatcagtcaagttcamcgaga 419
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2304 gtgcgttgacatatgaaagggaggtcctacaggtctcgccatcagtcaagttcaacgaga 2245
Query: 420 catgcattkactgtktktcacgttctgcgtactcgcaatttkaaaaggataaagtgaagc 479
|||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2244 catgcattgactgtgtgtcacgttctgcgtactcgcaatttgaaaaggataaagtgaagc 2185
Query: 480 ctatgtkgtcggkcgccggtcatgactcttkccaaaccgcaccgcatgtkccaacttcta 539
|||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 2184 ctatgtggtcgggcgccggtcatgactcttgccaaaccgcaccgcatgtgccaacttcta 2125
Query: 540 tkattttcattccatcaaaagatggcctatcgcataactattatgaatactcttcacctc 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 tgattttcattccatcaaaagatggcctatcgcataactattatgaatactcttcacctc 2065
Query: 600 aagaaatagctgatggtttcaaggtgttgttacaagctattatcaattatkataactata 659
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2064 aagaaatagctgatggtttcaaggtgttgttacaagctattatcaattatgataactata 2005
Query: 660 gagcaactcgcggccattaatt 681
||||||||||||||||||||||
Sbjct: 2004 gagcaactcgcggccattaatt 1983
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3031
Number of Sequences: 1807
Number of extensions: 3031
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 681
length of database: 10,358,551
effective HSP length: 16
effective length of query: 665
effective length of database: 10,329,639
effective search space: 6869209935
effective search space used: 6869209935
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (99.7 bits)